Season-long coaching sessions will be aimed at 14-25-year-olds.
The scheme, launched last week, has a major aim according to Premier League chief executive Richard Scudamore "The aim is to increase participation in women's and girls' football." he said.
He added: "Premier League clubs are in a unique position to do that."
FA general secretary Alex Horne added: "This is a fantastic initiative. The professional clubs' brands will attract more players and we know that qualified coaches will deliver top-class coaching sessions just where we need them."
According to the Women's Sport and Fitness Foundation, 131,000 women aged over 16 play football every week.
Sport England chief executive Jennie Price said her organisation was pleased to invest in what she called "a powerful initiative".
Clubs will work with county FAs, schools, colleges and universities to attract participants to the coaching sessions.
Minister for sport Helen Grant said: "This is great news for women's football at the grassroots level."
The FA launched a five-year plan to boost women's football in October 2012.